### SKADI: Sequence-based Knowledgebase for Annotation, Detection, and Identification SKADI is a simple, homology-based application designed to: - provide taxonomic annotations for viral contigs - map reads to virus contigs and support downstream analyses such as tANI/txAAI calculations and visualizations. ```{toctree} :maxdepth: 2 :caption: Contents installation running-skadi-contigs running-skadi-reads annotation-pipeline changelog extras-and-citation ``` click [here](https://github.com/Yasas1994/skadi.git) to go back to the source code.